Food Sources Research Articles

Web-based diagnostic platform for microorganism-induced deterioration on paper-based cultural relics with iterative training from human feedback

PurposePaper-based artifacts hold significant cultural and social values. However, paper is intrinsically fragile to microorganisms, such as mold, due to its cellulose composition, which can serve as a microorganisms’ nutrient source. Mold not only can damage papers’ structural integrity and pose significant challenges to conservation works but also may subject individuals attending the contaminated artifacts to health risks. Current approaches for strain identification usually require extensive training, prolonged time for analysis, expensive operation costs, and higher risks of secondary damage due to sampling. Thus, in current conservation practices with mold-contaminated artifacts, little pre-screening or strain identification was performed before mold removal, and the cleaning techniques are usually broad-spectrum rather than strain-specific. With deep learning showing promising applications across various domains, this study investigated the feasibility of using a convolutional neural network (CNN) for fast in-situ recognition and classification of mold on paper.MethodsMolds were first non-invasively sampled from ancient Xuan Paper-based Chinese books from the Qing and Ming dynasties. Strains were identified using molecular biology methods and the four most prevalent strains were inoculated on Xuan paper to create mockups for image collection. Microscopic images of the molds as well as their stains situated on paper were collected using a compound microscope and commercial microscope lens for cell phone cameras, which were then used for training CNN models with a transfer learning scheme to perform the classification of mold. To enable involvement and contribution from the research community, a web interface that actuates the process while providing interactive features for users to learn about the information of the classified strain was constructed. Moreover, a feedback functionality in the web interface was embedded for catching potential classification errors, adding additional training images, or introducing new strains, all to refine the generalizability and robustness of the model.Results & ConclusionIn the study, we have constructed a suite of high-confidence classification CNN models for the diagnostic process for mold contamination in conservation. At the same time, a web interface was constructed that allows recurrently refining the model with human feedback through engaging the research community. Overall, the proposed framework opens new avenues for effective and timely identification of mold, thus enabling proactive and targeted mold remediation strategies in conservation.

PEMENUHAN GIZI DAN PENINGKATAN PENDAPATAN MASYARAKAT DENGAN BUDIDAYA SAYURAN DI LAHAN PEKARANGAN

Fulfilling people's food needs faces many obstacles, especially due to changes in environmental conditions, such as climate change, land conversion, and the increasing number of cases of pest attacks and plant diseases which cause a decrease in crop yields. The solution offered is to use yard land for cultivating plants. Apart from being able to be used for daily consumption, the harvest from the yard can also be sold as a side business for family members. The community service program aims to assist the target community in increasing their knowledge and skills in optimally utilizing yard land for cultivating vegetable crops. The method used is community empowerment with activities: counseling, training and participatory mentoring of target community groups. The results of the implementation of the community service program show an increase in community knowledge and skills in cultivating vegetable plants in their yards. Planting vegetable plants in the yard can be a source of food, medicine and environmental beauty, as well as increasing people's income.

Impact of Bisphenol‐A in the environment and its removal through biological agents: A review

AbstractEndocrine‐disrupting chemicals (EDCs) are synthetic compounds that can cause abnormalities in the functioning of the endocrine system of the human being, resulting in various health problems. Bisphenol‐A (BPA) is one of the important EDCs that is used in the manufacturing of plastics, food packaging canisters, and other day‐to‐day necessities. Since BPA is estrogenic in nature; its presence can affect the living component at a very low concentration. BPA and other EDCs are released from various sources like the plastic manufacturing industry, sewage treatment plants, and solid waste disposal points. Due to its global use, BPA has permeated different matrices, including our food sources. As a result, many adverse health effects have been reported, considering which, their treatment is necessary. Under the present investigation, we have reviewed various studies dealing with the sources, concentrations, and impact of BPA on the environment. In addition, we have also incorporated different treatment technologies including phytoremediation and bioremediation which can remove BPA effectively. Regardless of significant developments in our understanding of EDCs, uncertainties and knowledge gaps still occur and more studies are required to eradicate the problems of BPA contamination from our environment.

Biotransformation of aflatoxin B1 by a novel strain Brevundimonas sp. LF-1

Aflatoxin B1 (AFB1) is a potent mycotoxin and a common source of food and feed contamination, posing risks to both human and animal health. The biotransformation of AFB1 has been proven to be a promising approach to control AFB1 contamination. In this study, Brevundimonas sp. LF-1 capable of degrading AFB1 was isolated from a corn-planted soil sample. Strain LF-1 could degrade 86.90% of 2 mg L−1 AFB1 after incubation in Luria-Bertani (LB) medium at 30 °C for 72 h and exhibited high performance when exposed to up to 10.0 mg L−1 AFB1. The optimum pH and temperature were 7.0–10.0 and 30 °C, respectively. The results of the in vitro cytotoxicity assay showed that the degradation products had considerably (p < 0.05) less harmful effects than the parent AFB1. Additionally, strain LF-1 possessed the bioremediation potential of AFB1 contamination for biocontrol strategies in animal fodder. Two putative novel AFB1-degrading enzymes, peroxiredoxin 1 and peroxiredoxin 2, were identified in the genome of strain LF-1. Comparative genomics indicated that the peroxiredoxin enzyme was widely distributed in the genus Brevundimonas. The comprehensive examination of strain LF-1 has outstanding potential for the development of detoxifying agents for AFB1 in the food and feed industries.

Food-web construction and ecological effects of implementing non-traditional biomanipulation in eutrophic reservoirs in North-central China

ABSTRACT This study was undertaken to elucidate the food web structure and interspecific interactions in the lakes and reservoirs undergoing eutrophication and to assess the efficacy of lake-wide non-traditional biomanipulation (direct predation of cyanobacteria by proliferating planktivorous fish) for bloom management. Analyses of aquatic organisms and stable isotopes of basic food sources and consumers were performed for Zhangze Reservoir in North-central China. Additionally, an improved scheme based on plankton changes and interspecific interactions is proposed on this basis. Compared with other widely-studied eutrophic reservoirs, the δ 15N value of each component of the food web in Zhangze Reservoir was higher, the food chain was relatively long and the δ 13C range of fish consumers was narrower. Planktivorous fish consumed phytoplankton as their primary food source. However, the phytoplankton biomass and the percentage of cyanobacteria increased, and eutrophication did not improve. The findings concerning the composition of consumers and their food sources in Zhangze Reservoir indicate the urgent need to change the fish structure to optimise the structure of plankton community and mitigate phytoplankton overgrowth. The study findings provide a basis for the implementation of effective eutrophication management strategies in lakes and reservoirs where planktivorous fish are prevalent.

Bacteriological Analyses of Fish Mucus from Fish Market with Reference to Consumer’s Health

A study was conducted to evaluate the bacteria load present in fish mucus collected from Nanpura wholesale fish market during the period from 30th December 2022 to 20th February 2023. Total 20 fish mucus samples were determined by Total Plate Count (TPC) and identification of bacteria. High bacterial load with pathogens such as Escherichia coli (Gram negative bacteria) and Staphylococcus aureus (Gram positive bacteria) were found in all fresh and marine fish samples from study area. These pathogens can survive and multiply in fish, transferred into consumer by way of food and main source of fish poisoning, diarrhoea, meningitis and septicemia which cause health risk to consumer. The fishes were contaminated with pathogenic bacteria indicated poor handling of fishes, lack of preservation facility and unhygienic condition of study area. Thus, it is strongly recommended to improve the quality control and quality assurance systems of the study area to minimize the prevalence of pathogenic bacteria.

An insight into the weeds of dark waters for animal health and wealth

Today’s world be it man or animal, there is scarcity of good food and nutrition with many health issues. The animal world especially is not fodder secure with over 500 million animals to feed in our country alone. The process of deforestation and concretisation of the land, reduced farming land, low farming affinity, crop losses and low harvests due to demineralisation of the land can be attributed as the cause for this. At this juncture the search for alternate fodder sources have led our way to the “SEA VEGGIES” MISNOMERED as Sea weeds. These form nearly 70% of the earth’s plant treasure wherein only 1 % of it has been utilised as of now. Seaweeds have nearly 63 minerals, protein to a max. Of 60%, apart from all vitamins (except vit-D), Omega 3 fatty acids, flavinoidds and caretonoids. Apart from being good sources of food, they have industrial usage in the form of Algin, Alginic acid and Carragenan. Used as fertilizers and soil binders, in waste water treatment, in cosmetics and medicines. Our ancient wisdom has given an insight into the usage of seaweeds to feed and treat the animals. Our work embarks upon the prospect of the use of seaweeds in the health and nutrition of animals and found to be the best alternative yet to be tapped.

Passiflora nitida Kunth fruit: Chemical analysis, antioxidant capacity, and cytotoxicity

Passiflora nitida is a fruit-bearing species native to the Amazon region, considered an unconventional food plant, with its fruit commonly known as wild passion fruit. The aim of this study was to investigate the antioxidant properties, chemical profile, phenolic composition, and cytotoxicity of pulps and teas based on the pulp of P. nitida, contributing to the exploration of this species. This study provides important information about the chemical composition, which will contribute to the development of products based on wild passion fruit. The production of nonalcoholic beverages from the pulp with seeds is a viable alternative for utilizing the fruits with greater results, potentially offering a product with higher bioactive compounds and antioxidant capacity compared to seedless pulp. Moreover, P. nitida seed tea may constitute a significant source of nutrients for human consumption.

Organic Farming vs. Integrated Nutrient Management: A Comparative Review of Agricultural Productivity and Sustainability

In an era where sustainable agriculture is crucial for global food security and environmental preservation, organic farming and Integrated Nutrient Management (INM) have emerged as leading practices. This review paper offers a comprehensive comparison of these two approaches, focusing on their impact on agricultural productivity and sustainability. Organic farming, with its emphasis on reducing the use of chemical fertilizers, pesticides, growth hormones, and feed additives, aligns closely with the principles of sustainability. It enhances food quality, promotes soil health, and mitigates adverse environmental effects by encouraging natural recovery cycles. However, organic farming's limitations, such as lower yields and a more labour-intensive approach have prompted interest in innovative solutions that blend organic practices with modern technologies. Integrated Nutrient Management (INM) presents a compelling alternative. By combining organic, inorganic, and biological nutrient sources, INM seeks to optimize nutrient use efficiency and maintain soil health. This approach offers a flexible nutrient management strategy, balancing organic and inorganic inputs to maintain crop productivity while reducing environmental impact. Studies have shown that INM can improve soil properties, such as bulk density, porosity, and water-holding capacity, leading to enhanced crop yields and lower greenhouse gas emissions. The paper explores how INM's integrated approach not only stabilizes crop production but also supports the growth of soil microbes, providing a source of energy and organic carbon. By using a combination of specific microorganisms, organic matter, and minimal doses of inorganic fertilizers, INM can achieve a harmonious balance that reduces environmental pollution and ensures long-term soil fertility. Ultimately, this review underscores the potential of combining organic and INM practices to create a sustainable and productive agricultural system. Through a comparative analysis, the paper aims to guide researchers, policymakers, and farmers towards adopting strategies that foster agricultural sustainability without compromising productivity.

Cultural food practices and sources of nutrition information among pregnant and postpartum migrant women from low- and middle-income countries residing in high income countries: A systematic review

Women in low- and middle-income countries (LMICs) may engage in a range of cultural food practices during pregnancy, including restricting or avoiding foods high in protein and iron, and foods rich in vitamins and minerals. While research has explored the cultural food practices of pregnant women in LMICs, there is less understanding of the continued cultural food practices of women who migrate to high-income countries and then become pregnant. This systematic review explores the existing research on cultural food practices and sources of nutrition information among pregnant and postpartum migrant women from LMICs, residing in high-income countries. A systematic search was conducted in April 2024 across Global Health, CINAHL, and MEDLINE, published in English, with no date restrictions. Eligible studies included those focused on pregnant and postpartum women who had migrated from LMICs to high-income countries. Studies were excluded if they comprised of non-immigrant women or did not involve LMIC participants. Screened were studies for eligibility, data were extracted, and study quality was assessed. In total, 17 studies comprising qualitative (n = 10) and quantitative (n = 7) approaches were included. In 14 studies participants adhered to cultural food practices, wherein certain nutritious foods were restricted during pregnancy or the postpartum period; three studies noted limited adherence due to support, acculturation, and access to traditional foods. Most studies (n = 10) reported traditional “hot” and “cold” food beliefs during pregnancy and postpartum, aiming to maintain humoral balance for maternal and child health and to prevent miscarriage. Nutrition advice was sought from family members, friends, relatives, healthcare providers, and media sources, with a preference for advice from family members in their home countries. There is a need for culturally appropriate nutrition education resources to guide pregnant migrants through healthy and harmful cultural food practices and overall nutrition during this crucial period. (PROSPERO Registration: CRD42023409990).

The adaptive prowess of the lesser mealworm Alphitobius diaperinus (Coleoptera: Tenebrionidae): Insights from mouthpart morphology and mitogenomic analysis

The lesser mealworm, Alphitobius diaperinus (Panzer, 1797), is a pervasive pest known to infest stored products and poultry facilities worldwide, posing significant challenges for pest management. Understanding its adaptability to diverse environments is crucial for devising effective control strategies. This study investigated adult mouthparts and analyzed the mitogenome of A. diaperinus using specimens obtained from a cat litter box. The examination of mouthparts revealed notable intraspecific variations, suggesting potential adaptations to different ecological conditions. Analysis of the mitogenomes unveiled nucleotide variations in protein-coding genes (PCGs), ribosomal RNA genes (rRNAs), and the control region, with all mutations in PCGs being nonsynonymous, primarily occurring at the second codon positions. Evaluation of Ka/Ks ratios indicated purifying selection acting on the PCGs of A. diaperinus. Phylogenetic analyses consistently placed the newly sequenced sample within the same clade as previously sequenced A. diaperinus samples. The presence of A. diaperinus in cat litter highlights its remarkable adaptability to diverse habitats. Furthermore, intraspecific variation in mouthpart morphology and the mitogenome suggests ongoing adaptations to various food sources and environmental niches. These findings underscore the dynamic nature of A. diaperinus adaptations and emphasize the importance of continued research for effective pest management strategies.

Drifting along: using diatoms to track the contribution of microbial mats to particulate organic matter transport in a glacial meltwater stream in the McMurdo Dry Valleys, Antarctica

Flow pulses mobilize particulate organic matter (POM) in streams from the surrounding landscape and streambed. This POM serves as a source of energy and nutrients, as well as a means for organismal dispersal, to downstream communities. In the barren terrestrial landscape of the McMurdo Dry Valleys (MDV) of Antarctica, benthic microbial mats occupying different in-stream habitat types are the dominant POM source in the many glacier-fed streams. Many of these streams experience daily flow peaks that mobilize POM, and diatoms recovered from underlying stream sediments suggest that mat-derived diatoms in the POM are retained there through hyporheic exchange. Yet, ‘how much’ and ‘when’ different in-stream habitat types contribute to POM diatom assemblages is unknown. To quantify the contribution of different in-stream habitat types to POM diatom assemblages, we collected time-integrated POM samples over four diel experiments, which spanned a gradient of flow conditions over three summers. Diatoms from POM samples were identified, quantified, and compared with dominant habitat types (i.e., benthic ‘orange’ mats, marginal ‘black’ mats, and bare sediments). Like bulk POM, diatom cell concentrations followed a clockwise hysteresis pattern with stream discharge over the daily flow cycles, indicating supply limitation. Diatom community analyses showed that different habitat types harbor distinct diatom communities, and mixing models revealed that a substantial proportion of POM diatoms originated from bare sediments during baseflow conditions. Meanwhile, orange and black mats contribute diatoms to POM primarily during daily flow peaks when both cell concentrations and discharge are highest, making mats the most important contributors to POM diatom assemblages at high flows. These observations may help explain the presence of mat-derived diatoms in hyporheic sediments. Our results thus indicate a varying importance of different in-stream habitats to POM generation and export on daily to seasonal timescales, with implications for biogeochemical cycling and the local diatom metacommunity.

Effect of Different Spacing Level and Growth Stages of Chekkurmanis (Sauropus androgynus L.) on Plant Growth

Background: Chekkurmanis, is a shrubby glabrous perennial green leafy vegetable, extensively grown in warm humid tropics. It is called as “Multivitamin / Multigreen” plant. Micronutrient deficiency has spread all over the world and it is termed as “Hidden Hunger”. In this regard, chekkurmanis is the chief source of many minerals and nutrients is help to eradicate these deficiencies. The yield enhancement and improvement on plant growth characters could be manipulated by adopting optimized cultural practices, especially plant spacing and stage of harvest. With the background, present study was taken up to examine the variations in morphologically; under different spacing’s in relation to different growth stages were assessed and discussed. Methods: The research study was carried during 2019-2020. The healthy rooted cuttings collected from Orchard, Agricultural College and Research Institute, Madurai, Tamil Nadu. The research trial consisted of two factors different spacing’s (Factor I) and specific days interval (Factor II). Result: Based on the results, it can be suggested that growth characters i.e. plant height, number of branches, number of leaves per plant and petiole length parameters were significantly higher under closer spacing at 180 days after planting (S1D3). While, Maximum leaf length, leaf breadth and plant spread were recorded under wider spacing at 180 days after planting (S5D3).

The impact of dietary guava ( Psidium guajava L.) on some livestock production systems

Abstract Due to the growing concerns about antimicrobial resistance and the potential for a ban on antibiotic growth promoters worldwide, there is an increasing demand to find alternatives to antimicrobials in livestock production. One of these alternatives is herbal extracts or phytobiotics that already are used as dietary supplements to improve the general health conditions. Guava ( Psidium guajava L.) has a long history of nutritional and medicinal properties. All the body parts of guava and the by-products have been applied effectively in livestock systems. The guava plant is a good source of nutrients as it is rich in flavonoids, phenols, tannins, essential oils, lectins, vitamins, fatty acids, etc. All parts of the guava plant including leaves, pulp, and seeds have been used as antioxidant, antimicrobial, antihypertensive, anti-inflammatory, antidiarrheic, anticancer, immuno-stimulant, growth promotor, cough sedative, and hypocholesterolemic. Therefore, this review was planned to focus on the impact of using dietary guava on the different health parameters of some livestock production systems including poultry and rabbits.

Development of Nutrient-rich Cake with Supplementation of Pea Shells Powder and Nutritional Evaluation

Background: Bakery products like cakes are rich in starch, fat, and energy but deficient in fiber, vitamins, and minerals. The cake is becoming a well-known delicacy during festival periods between all age groups mostly in urban areas. Providing a healthy and nutritious cake remains a main problem on account of extreme sugar or fat content that predisposes the buyers to obesity. Mixing the flours with plant components helps solve problems of low nutritive value of cereals. Pea shells are an excellent source of nutrients and have excellent functional properties, the substitution of flour with pea shells powder is the best way for consuming the nutrients which are likely to contribute substantially to the fight against targeted hunger and to bridge the gap of malnutrition. Keeping the view of the potential of pea shells powder in formulated products the healthy and nutritious cakes were investigated. Methods: Three cakes were developed with different formulations that include refined flour and pea shells powder in the ratio of 100:0, 90:10, and 80:20 with other basic ingredients of baking. The developed cakes were analyzed for organoleptic and nutritional properties such as proximate, dietary fiber, and minerals. Result: The sensory mean score was increased by the supplementation of pea shells powder. The result showed that 10% level was the optimum level of incorporation. A significant increase (0 greater than 0.05) in the nutrient contents such as protein (10.97 to 12.38%), crude fiber 90.31 to 1.85%), ash, calcium (53.33 to 193.33 mg/100 gm), potassium (162.48 to 335.42 mg/100 gm), magnesium (56.75 to 253.33 mg/100 gm), iron (3.94 to 5.49 mg/100 gm), and potassium (162.48 to 335.42 mg/100 gm) of incorporated cakes and decreased the fat (25.55 to 21.72%), energy (451.83 to 413.76 kcal/100 gm) content compared to control cake. The calcium and magnesium content increased two or four times more than control cakes. From the present study, it can be concluded that cakes containing 20% pea shells powder were nutritionally rich.

Dietary fatty acids modulate oxidative stress response to air pollution but not to infection

Anthropogenic changes to the environment expose wildlife to many pollutants. Among these, tropospheric ozone is of global concern and a highly potent pro-oxidant. In addition, human activities include several other implications for wildlife, e.g., changed food availability and changed distribution of pathogens in cities. These co-occurring habitat changes may interact, thereby modulating the physiological responses and costs related to anthropogenic change. For instance, many food items associated with humans (e.g., food waste and feeders for wild birds) contain relatively more ω6-than ω3-polyunsaturated fatty acids (PUFAs). Metabolites derived from ω6-PUFAs can enhance inflammation and oxidative stress towards a stimulus, whereas the opposite response is linked to ω3-derived metabolites. Hence, we hypothesized that differential intake of ω6-and ω3-PUFAs modulates the oxidative stress state of birds and thereby affects the responses towards pro-oxidants. To test this, we manipulated dietary ω6:ω3 ratios and ozone levels in a full-factorial experiment using captive zebra finches (Taeniopygia guttata). Additionally, we simulated an infection, thereby also triggering the immune system’s adaptive pro-oxidant release (i.e., oxidative burst), by injecting lipopolysaccharide. Under normal air conditions, the ω3-diet birds had a lower antioxidant ratio (GSH/GSSG ratio) compared to the ω6-diet birds. When exposed to ozone, however, the diet effect disappeared. Instead, ozone exposure overall reduced the total concentration of the key antioxidant glutathione (tGSH). Moreover, the birds on the ω6-rich diet had an overall higher antioxidant capacity (OXY) compared to birds fed a ω3-rich diet. Interestingly, only the immune challenge increased oxidative damage, suggesting the oxidative burst of the immune system overrides the other pro-oxidative processes, including diet. Taken together, our results show that ozone, dietary PUFAs, and infection all affect the redox-system, but in different ways, suggesting that the underlying responses are decoupled despite that they all increase pro-oxidant exposure or generation. Despite lack of apparent cumulative effect in the independent biomarkers, the combined single effects could together reduce overall cellular functioning and efficiency over time in wild birds exposed to pathogens, ozone, and anthropogenic food sources.

Growth of Romaine Lettuce in Eggshell Powder Mixed Alginate Hydrogel in an Aeroponic System for Water Conservation and Vitamin C Biofortification

Vitamin C is crucial for physical well-being, and its deficiency can lead to severe health consequences. Biofortification has been used to address this deficiency by enhancing vitamin C in plants. Additionally, soilless agriculture has been used to conserve and optimize water use in comparison to conventional agriculture. While hydrogels have been shown to improve water conservation and are used for biofortification in crops, their application has only been explored in soil-based and hydroponic farming. The aeroponics system is a plant-growing method that has shown potential for increasing yields and biomass while conserving water and nutrients. In this paper, we have developed an aeroponic-compatible medium to grow romaine lettuce (Lactuca sativa L.) with eggshell powder (ESP) mixed with calcium-alginate hydrogel as a substrate and nutrient source aiming to conserve water and incorporate vitamin C through biofortification. Herein, lower water spray time and higher intervals, with varied gel types and ESP concentrations, resulted in healthy lettuce growth. Plants treated with 0.5% ascorbic acid-absorbed ESP-mixed alginate hydrogel for biofortification showed higher levels of vitamin C compared to the traditional method. This study suggests using an alginate hydrogel–ESP-based substrate in aeroponics to reduce water usage and enhance plant biofortification of vitamin C.

Characterization and functional evidence for Orf2 of Streptomyces sp. 139 as a novel dipeptidase E

Aspartyl dipeptidase (dipeptidase E) can hydrolyze Asp-X dipeptides (where X is any amino acid), and the enzyme plays a key role in the degradation of peptides as nutrient sources. Dipeptidase E remains uncharacterized in Streptomyces. Orf2 from Streptomyces sp. 139 is located in the exopolysaccharide biosynthesis gene cluster, which may be a novel dipeptidase E with “S134-H170-D198” catalytic triad by sequence and structure comparison. Herein, recombinant Orf2 was expressed in E. coli and characterized dipeptidase E activity using the Asp-ρNA substrate. The optimal pH and temperature for Orf2 are 7.5 and 40 ℃; Vmax and Km of Orf2 are 0.0787 mM·min−1 and 1.709 mM, respectively. Orf2 exhibits significant degradation activities to Asp-Gly-Gly, Asp-Leu, Asp-His, and isoAsp-Leu and minimal activities to Asp-Pro and Asp-Ala. Orf2 contains a Ser-His-Asp catalytic triad characterized by point mutation. In addition, the Asp147 residue of Orf2 is also proven to be critical for the enzyme’s activity through molecular docking and point mutation. Transcriptome analysis reveals the upregulation of genes associated with ribosomes, amino acid biosynthesis, and aminoacyl-tRNA biosynthesis in the orf2 mutant strain. Compared with the orf2 mutant strain and WT, the yield of crude polysaccharide does not change significantly. However, crude polysaccharides from the orf2 mutant strain exhibit a wider range of molecular weight distribution. The results indicate that the Orf2 links nutrient stress to secondary metabolism as a novel dipeptidase E.Key points• A novel dipeptidase E with a Ser-His-Asp catalytic triad was characterized from Streptomyces sp. 139.• Orf2 was involved in peptide metabolism both in vitro and in vivo.• Orf2 linked nutrient stress to mycelia formation and secondary metabolism in Streptomyces.

Isolation of the Antifungal Compound Alliodorin from the Heartwood of Cordia elaeagnoides A. DC. and the In Silico Analysis of the Laccase

Cordia elaeagnoides A. DC. is an endemic species of Mexico valued for its timber. Renowned for its durability, resistance, and versatile applications in medicine, this tree holds significant commercial importance. Tetrahydrofuran (THF) extract from the heartwood of C. elaeagnoides was studied. Through chromatographic column purification, the compound 8-(2,5-Dihydroxyphenyl)-2,6-dimethylocta-2,6-dienal, also known as alliodorin, was successfully isolated. Identification of alliodorin was confirmed through comprehensive analysis utilizing NMR, IR, and mass spectrometry techniques. Inhibition tests were conducted using both the THF extract and alliodorin against the rotting fungus Trametes versicolor (L.) Lloyd, employing the agar well diffusion assay. Remarkably, alliodorin exhibited 100% inhibition with a median lethal concentration of 0.079 mg/mL and a total lethal concentration of 0.127 mg/mL, in comparison to the commercial fungicide benomyl, which requires a concentration of 1 mg/mL. In silico analysis through molecular docking on the laccase enzyme was proposed in order to explain the inhibitory activity against the fungus T. versicolor, as this enzyme is one of the main sources of nutrients and development for the fungus. Based on these findings, we deduced that alliodorin holds promise as a potent antifungal agent, potentially applicable in a wide array of technological and environmentally friendly initiatives.

Industrial mining trial for polymetallic nodules in the Clarion-Clipperton Zone indicates complex and variable disturbances of meiofaunal communities

Following several small-scale benthic disturbance experiments, an industrial polymetallic nodule collector trial was conducted by the company Global Sea mineral Resources (GSR) in their exploration contract area in the Clarion-Clipperton Zone using the pre-prototype vehicle Patania II (PATII). In this study, meiofaunal (i.e., nematode abundance, ASV diversity and genus composition) and environmental (i.e., grain size, total organic carbon/total nitrogen and pigment) properties are compared between disturbance categories (i.e., Pre-impact, Collector Impact and Plume Impact). One week after the trial, proxies for food availability within the Collector Impact sediments were altered with lower total organic carbon (TOC) and pigment (i.e., CPE: sum of Chlorophyll a and phaeopigments) values. Albeit not significant, the observed decrease of nematode abundance and ASV diversity, further indicate the consequences of the removal of the ecologically important surface sediment layer within the PATII tracks. Next to sediment removal, exposed sediments were modified in different ways (e.g., central strips, parallel caterpillar imprints with alternating bands of depressions/ripples and interface patches) and were also subject to heavy collector-induced sediment blanketing. We propose that these cumulative impacts have led to intricate seabed modifications with various levels of disturbance intensity which resulted in the high meiofaunal variability observed. Adjacent nodule-rich areas (i.e., Plume Impact) received considerable levels of sediment deposition (2-3 cm) and were defined by significantly lower food sources (CPE, TOC, carbon to nitrogen ratio) and an observation of meiofaunal enrichment (i.e., higher average nematode abundance and ASV diversity; although statistically non-significant), but mechanisms behind these ecological changes (e.g., suspended material-surface fluxes, passive dispersal of fauna in the plume vs. active upward migration and “viability” of redeposited fauna) remain unresolved. We conclude that complex benthic pressure-response relationships associated with the PATII trial, combined with the high degree of natural spatial and temporal variability in abyssal meiofaunal communities and sedimentary parameters, complicates the quantitative assessment of deep-sea mining associated disturbances.